PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF081400030CFD_t1
Common NameTRAES_3BF081400030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 221aa    MW: 25035.5 Da    PI: 6.0624
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF081400030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.97.4e-172884359
                             -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-.SSSTTEEEEEEES--SS- CS
                     WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers.aedpkvveitYegeHnhe 59
                             Dg+ WrKYGqK++k+s fpr  Yr   ++C + k v+++ +edp ++++tY+ eH+++
  TRAES3BF081400030CFD_t1 28 DGHLWRKYGQKNIKDSVFPRCSYR-EDKQCLASKLVQQEnHEDPPLFKVTYTYEHTCN 84
                             9*******************9999.4679*******9752689*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.22E-161985IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-172084IPR003657WRKY domain
SMARTSM007741.5E-252685IPR003657WRKY domain
PROSITE profilePS5081112.2662886IPR003657WRKY domain
PfamPF031065.2E-192883IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAMGWFLWAW RWKDRPSWVK HTFTPHFDGH LWRKYGQKNI KDSVFPRCSY REDKQCLASK  60
LVQQENHEDP PLFKVTYTYE HTCNTAPVPT PDVVAELPAP ATGDALFLRF NSTGAGHRDA  120
HRMEQERHYQ QPAAPGWPSM MLSFDSNSQQ HEQCTFPSEL PPTASSSSFS TEGLPAPPST  180
TDGGGDGFST WDSLRYGLND HVHFGDHSYL PNSGNDGDDN Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564497.14e-96PREDICTED: probable WRKY transcription factor 38
TrEMBLA0A077RWK21e-167A0A077RWK2_WHEAT; Uncharacterized protein
STRINGBRADI2G53495.11e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-14WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]